Documentation for Chemical Markup Language (CML)
Definition Type: Attribute
Name: atomMap
Namespace: http://www.xml-cml.org/schema
Type: nsA:idType
Containing Schema: schema.xsd
Use (Optional)
Documentation:
A reference to a map providing mappings between atoms The map will normally be contained within the same document and referenced by its ID. It will contain a list of links with from and to attributes linking atoms. The topology of the linking is defined by the application - it could be overlay of molecular fragments, reactant/product mapping, etc. The reserved phrase "USE_IDS" assume that the sets of atoms are of equal size and have 1:1 mapping between each id. This is another way of saying that the atoms mapped by a given ID are "the same atom".
Collapse XSD Schema Diagram:
XSD Diagram of atomMap in schema schema_xsd (Chemical Markup Language (CML))
Collapse XSD Schema Code: 
<xsd:attribute id="att.atomMap" name="atomMap" type="idType">
    <xsd:annotation>
        <xsd:documentation>
            <h:div class="summary" xmlns:h="http://www.w3.org/1999/xhtml">A reference to a map providing mappings between atoms</h:div>
            <h:div class="description" xmlns:h="http://www.w3.org/1999/xhtml">The map will normally be contained within the same document and referenced by its ID. It will contain a list of links with from and to attributes linking atoms. The topology of the linking is defined by the application - it could be overlay of molecular fragments, reactant/product mapping, etc. The reserved phrase "USE_IDS" assume that the sets of atoms are of equal size and have 1:1 mapping between each id. This is another way of saying that the atoms mapped by a given ID are "the same atom". </h:div>
        </xsd:documentation>
    </xsd:annotation>
</xsd:attribute>
Collapse Derivation Tree:
Documentation for Chemical Markup Language (CML)

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